PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_209170_oise.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TCP
Protein Properties Length: 362aa    MW: 38249.7 Da    PI: 7.1985
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_209170_oise.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.33.2e-3523130189
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                         a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i++l+++                          
  Bv9_209170_oise.t1  23 ATGRKDRHSKVFTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDKLAELppwdptasasnavdvnagpttefgvg 113
                         589**************************************************************88886554444444444444444443 PP

                 TCP  66 ....ssssaseceaesssssasnsssg..........k 89 
                             s                     +          +
  Bv9_209170_oise.t1 114 dhsgS---------------------SsfyvpqcvdsQ 130
                         33220.....................133333333220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-302489IPR005333Transcription factor, TCP
PROSITE profilePS5136932.3132684IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGLKSTAAGG EIVQVQGGHI IRATGRKDRH SKVFTAKGPR DRRVRLSAHT AIQFYDVQDR  60
LGYDRPSKAV DWLIKKAKAS IDKLAELPPW DPTASASNAV DVNAGPTTEF GVGDHSGSSS  120
FYVPQCVDSQ SLGDSMKSFF PTNNASEENS ISFQNYPHDL ISRGASQNQD LCLSLHTLQD  180
PGGSSSGHHH TTSSHHHSAL FQGSGSSLGF DGGTGGWTES QQPHDLGRFT RMLSWPSGGG  240
AGSGGSSGGS GTGEGRGGIL FNSSLFQPQG LLLGHQQGPI TTSTFSQRGP LQSNFSPLAR  300
VVEDHHHHHN HHQEISGIGH GSDGFMGFCI PSQIHGELHG GANSMSTNRA SSSSMSPDSS  360
QH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689747.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR53e-80TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A0J8EFY20.0A0A0J8EFY2_BETVU; Uncharacterized protein
STRINGscaffold_301743.11e-83(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-64TCP family protein